Emily L. Clarke, Ryckie G. Wade, Derek Magee, Julia Newton-Bishop & Darren Treanor (2023)
Image analysis of cutaneous melanoma histology: a systematic review and meta-analysis
www.nature.com/scientificreports

Ruisch JE, Kloft M, Fazzi GE, Melenhorst J, Magee DR, Grabsch HI. 2020.
Large negative lymph nodes - a surrogate for immune activation in rectal cancer patients?. (White Rose Research Online) Pathology, Research and Practice. 216.9

Tempest N, Jansen M, Baker A, Hill CJ, Hale M, Magee D, Treanor D, Wright NA, Hapangama DK. 2020.
Histological 3D reconstruction and in vivo lineage tracing of the human endometrium. (White Rose Research Online) The Journal of Pathology. 440-451 251.4

Kraima AC, West NP, Roberts N, Magee DR, Smit NN, van de Velde CHJ, DeRuiter MC, Rutten HJ, Quirke P. 2020.
The role of the longitudinal muscle in the anal sphincter complex: Implications for the Intersphincteric Plane in Low Rectal Cancer Surgery?. (White Rose Research Online) Clinical Anatomy. 567-577 33.4

Bethany Williams, Darren Treanor (2020) A Practical Guide to Training and Validation for Primary Diagnosis with Digital Pathology Journal of Clinical Pathology Volume 73, Issue 7

Emily L. Clarke, Craig Munnings, Bethany Williams, David Brettle, Darren Treanor (2020) Display evaluation for primary diagnosis using digital pathology (White Rose Research Online) J. Med. Imag. 7(2), 027501 (2020), doi: 10.1117/1.JMI.7.2.027501.

Bethany Jill Williams, David Brettle, Muhammad Aslam, Paul Barrett, Gareth Bryson, Simon Cross, David Snead, Clare Verrill, Emily Clarke, Alexander Wright, Darren Treanor (2020) Guidance for remote reporting of digital pathology slides during periods of exceptional service pressure: An emergency response from the UK royal college of pathologists. J Pathol Inform 2020, 11:12

Bethany Jill Williams, Azzam Ismail, Arundhati Chakrabarty, Darren Treanor (2020) Clinical digital neuropathology: experience and observations from a departmental digital pathology training programme, validation and deployment. Journal of Clinical Pathology 2019;

Duisit J, Amiel H, Wüthrich T, Taddeo A, Dedriche A, Destoop V, Pardoen T, Bouzin C, Joris V, Magee D, Vögelin E, Harriman D, Dessy C, Orlando G, Behets C, Rieben R, Gianello P, Lengelé B. 2018.
Perfusion-decellularization of human ear grafts enables ECM-based scaffolds for auricular vascularized composite tissue engineering. (White Rose Research Online) Acta Biomaterialia. 339-354 73

Lockwood C, Hussain B (2018)
Total Digital Pathology

This article appeared in the November issue of the IBMS magazine, The Biomedical Scientist. For more information, visit ibms.org and thebiomedicalscientist.net

Falk M, Ynnerman A, Treanor D, Lundström C (2018)
Interactive Visualization of 3D Histopathology in Native Resolution

Capitanio A, Dina RE, Treanor D (2018)
Digital cytology: A short review of technical and methodological approaches and applications Cytopathology. 2018;29:317-325.

Treanor D, Williams BJ (2018)
The Leeds Guide to Digital Pathology The Leeds Teaching Hospitals NHS / University of Leeds

Williams BJ, Hanby H, Millican-Slater R, Nijhawan A, Verghese E, Treanor D. (2018)
Digital pathology for the primary diagnosis of breast histopathological specimens: an innovative validation and concordance study on digital pathology validation and training Histopathology 72, 662-671. https://doi.org/10.1111/his.13403.

Williams BJ, Lee J, Oien KA, Treanor D. (2018)
Digital pathology access and usage in the UK: results from a national survey on behalf of the National Cancer Research Institute's CM-Path initiative J Clin Pathol: first published as 10.1136/jclinpath-2017-204808 on 9 January 2018.

Williams BJ, Bottoms D, Clark D, Treanor D. (2018)
Future-proofing pathology part 2: building a business case for digital pathology J Clin Pathol: first published as 10.1136/jclinpath-2017-204926 on 16 March 2018.

Dessauvagie BF, Lee AHS, Meehan K, Nijhawan A, Tan PH, Thomas J, Tie B, Treanor D, Umar S, Hanby AM, Millican-Slater R. (2018)
Interobserver variation in the diagnosis of fibroepithelial lesions of the breast: a multicentre audit by digital pathology JCP Online First, published on February 13, 2018 as 10.1136/jclinpath-2017-204977

Clarke EL, Revie C, Brettle D, Shires M, Jackson P, Cochrane R, Wilson R, Mello-Thoms C, Treanor D. (2017)
Development of a novel tissue-mimicking color calibration slide for digital microscopy. Color Res Appl. 2018;43:184-197. (White Rose Research Online)

Ruddle, R. A., Thomas, R. G., Randell, R., Quirke, P., & Treanor, D. (2016). The design and evaluation of interfaces for navigating gigapixel images in digital pathology ACM Transactions on Computer-Human Interaction, 23(1), Article No. 5. DOI Also featured as the Editor's Spotlight

Gray, A., Wright, A., Jackson, P., Hale, M., Treanor, D. (2014) Quantification of histochemical stains using whole slide imaging: development of a method and demonstration of its usefulness in laboratory quality control. and at http://jcp.bmj.com J Clin Pathol. 2014 Dec 5. pii: jclinpath-2014-202526. doi: 10.1136/jclinpath-2014-202526.

Randell, R., Ruddle, R. A., Thomas, R. G., Mello-Thoms, C., Treanor, D. (2014) Diagnosis of major cancer resection specimens with virtual slides: Impact of a novel digital pathology workstation. Human Pathology In press. DOI: 10.1016/j.humpath.2014.06.017

Song, Y., Treanor, D., Bulpitt, A. J., Wijayathunga, N., Roberts, N., Wilcox, R., Magee D. R. (2014) Unsupervised content classification based nonrigid registration of differently stained histology images. IEEE Trans Biomed Eng. 2014 Jan;61(1):96-108. doi: 10.1109/TBME.2013.2277777. Epub 2013 Aug 8.

Badano, A., Revie, C., Casertano, A., Cheng, W., Green, P., Kimpe, T., Krupinski, E., Sisson, C., Skrøvseth, S., Treanor, D., Boynton, P., Clunie, D., Flynn, M. J., Heki, T., Hewitt, S., Homma, H., Masia, A., Matsui, T., Nagy, B., Nishibori, M., Penczek, J., Schopf, T., Yagi, Y., Yokoi, H. (2014) Consistency and Standardization of Color in Medical Imaging: a Consensus Report. Journal of Digital Imaging, The Journal of the Society for Computer Applications in Radiology 2014

Khan, A. M., Rajpoot, N., Treanor, D., Magee D. R. (2014) A Non-Linear Mapping Approach to Stain Normalisation in Digital Histopathology Images using Image-Specific Colour Deconvolution. IEEE Transactions on Biomedical Engineering, Vol. 61, No. 6, June 2014

Gilbert, S., Bernus, O., White E., Roberts, N., Treanor, D., Magee D. R. (2014) A Framework for Quantification of Regional Cardiac Fibrosis from Serial Sections using 3D Whole Slide Imaging. Proc. International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

Wright, A. I., Magee D. R., Quirke, P., Treanor, D. (2014) Towards automatic patient selection for chemotherapy in colorectal cancer trials Proc. SPIE 9041, Medical Imaging 2014: Digital Pathology, 90410A (March 20, 2014); doi:10.1117/12.2043220

Randell, R., Hutchins, G., Sandars, J., Ambepitiya, T., Treanor, D., Thomas R. G., Ruddle, R.A. (2012) Using a high-resolution wall-sized virtual microscope to teach undergraduate medical students. CHI 2012, May 5-10, 2012, Austin, TX, USA

Roberts, N., Magee, D., Song, Y., Brabazon, K., Shires, M., Crellin, D., Orsi, N. M., Quirke, R., Quirke, P., Treanor, D. (2012) Toward Routine Use of 3D Histopathology as a Research Tool. Am J Pathol. 2012 May;180(5):1835-42. Epub 2012 Apr 9.

Randell, R., Ruddle, R.A., Quirke, P., Thomas R. G., Treanor, D.(2012) Working at the microscope: analysis of the activities involved in diagnostic pathology. (White Rose Research Online) Histopathology. 2012 Feb;60(3):504-10. doi: 10.1111/j.1365-2559.2011.04090.x. Epub 2011 Dec 16.

Chomphuwiset, P., Magee, D. R., Boyle, R. D., Treanor, D. (2014) Nucleus classication and bile duct detection in liver histology.
Previously Human Pathology In press. DOI: 10.1016/j.humpath.2014.06.017

Magee, D. R., Treanor, D., Quirke, P. (2008) A New Image Registration algorithm with application to 3D Histopathology. Proc. Microscopic Image Analysis with Applications in Biology, 2008